GgaEX1053614 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38472949-38475146:-
Coord C1 exon
chr2:38475003-38475146
Coord A exon
chr2:38474089-38474224
Coord C2 exon
chr2:38472949-38473109
Length
136 bp
Sequences
Splice sites
3' ss Seq
AGTTTCTCCTTTTCTTCAAGACA
3' ss Score
4.5
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GCCACAGAGCTGTTTATATTGGCGTTCATGTCCCATTTGGAAAGCAGGGTCGTCGACGGCATAGACATCGTGGGCATAGACATCACAGAAGAAAAAAAGAAAAAGAAACTGATAGAGAAGATGGCAGAGAATCTCCATCGTACG
Seq A exon
ACACGCCATCCCAACGAGTGCAGTTTATCCTGGGTACTGAAGATGATGATGAACACATTCCTCATGATCTCTTCACTGAAATGGATGAACTTTGCTTCAGGGATGGAGAAGAGTATGAGTGGAAAGAAACTGCTAG
Seq C2 exon
GTGGCTAAAATTTGAAGAGGATGTTGAAGATGGTGGTGATCGTTGGAGCAAGCCTTATGTAGCAACTCTGTCTCTACACAGTCTCTTTGAATTGCGAAGCTGTATTCTTAATGGGACGGTCATGTTGGACATGAGAGCAAACACACTAGATGAGATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'5-10,'5-9,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=0.326 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF075658=Band_3_cyto=PU(17.5=85.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGGAAAGCAGGGTCGT
R:
GTCCAACATGACCGTCCCATT
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]