DreEX0073097 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42829165-42831225:-
Coord C1 exon
chr16:42831082-42831225
Coord A exon
chr16:42830850-42830988
Coord C2 exon
chr16:42829165-42829325
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTTCCACTGGTGGCTTCAGACA
3' ss Score
4.62
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCACAGAGCAGTTTATGTTGGCGTACATGTACCTTTAGGAAGACAAAGCAGAAGGAGACACCGCCACCGTGGTCATAAGCACCATCGGAAAAGGAAAGACAGATGCTCTGAGCGAGAGGACGGCAGAGATTCACCAACGTACG
Seq A exon
ACACTCCTTCACAGAGGGTCCAGTTTATCCTCGGCACTGAGGATGATGACGAGGAGCACATTCCTCATGACCTCTTCACTGAGCTTGACGAGCTGTGCTTCCGCGATGGACTCACTTGTGAGTGGAAAGAGACAGCCAG
Seq C2 exon
GTGGCTGAAGTTTGAAGAGGATGTAGAGGATGGAGGAGAGCGCTGGAGTAAGCCTTACGTCGCCACACTTTCTTTGCACAGCCTGTTTGAGTTGCGCAGCTGCATTCTCAATGGCACAGTCATGCTGGACATGAGAGCAAACAGCATTGAGGAGATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'4-4,'4-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.362 C2=0.000
Domain overlap (PFAM):
C1:
PF079317=CPT=PD(39.3=87.5)
A:
NO
C2:
PF075658=Band_3_cyto=PU(17.2=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGCAGAAGGAGACACCG
R:
TGTTTGCTCTCATGTCCAGCA
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]