MmuEX6039655 @ mm10
Exon Skipping
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:14733722-14738344:+
Coord C1 exon
chr14:14733722-14733868
Coord A exon
chr14:14737369-14737507
Coord C2 exon
chr14:14738184-14738344
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGTACTGTTGTTTTGCTAAGACA
3' ss Score
3.04
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GTCATCGAGCTGTATATGTTGGTGTTCATGTACCATTTAGTAAAGAGAGTCGTCGGCGTCACAAGCATCGAGGGCACAAACATCACCACCGGAGAAGAAAAGACAAAGACTCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATG
Seq A exon
ACACGCCATCGCAGAGGGTGCAGTTCATCCTCGGGACTGAAGACGACGATGAGGAGCACATTCCCCACGACCTCTTCACAGAGATGGATGAGCTCTGCTACAGAGACGGAGAAGAGTACGAGTGGAAGGAGACGGCCAG
Seq C2 exon
GTGGCTGAAATTTGAAGAGGATGTTGAAGATGGTGGTGACCGATGGAGTAAACCCTATGTGGCAACTCTGTCTCTACACAGTCTCTTTGAATTGAGGAGTTGTATCCTGAATGGAACAGTTATGCTGGATATGAGAGCAAGCACTCTTGATGAAATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-'5-15,'5-11,14-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=0.404 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF075658=Band_3_cyto=PU(17.5=85.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGAGAGTCGTCGGCGTCA
R:
GTGCTTGCTCTCATATCCAGCA
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types