RnoEX6051274 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11883311-11888324:-
Coord C1 exon
chr15:11888178-11888324
Coord A exon
chr15:11884142-11884280
Coord C2 exon
chr15:11883311-11883471
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCCTGTTTTGTTCAGACA
3' ss Score
7.82
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCATCGAGCTGTATATGTTGGTGTTCATGTACCGTTTAGTAAAGAGAGTCGTCGGCGTCACAGGCATCGAGGGCACAAACATCACCACCGGAGAAGAAAAGACAAAGACTCAGATAAGGAAGATGGACGGGAGTCTCCTTCTTATG
Seq A exon
ACACGCCATCGCAGAGGGTGCAGTTCATCCTTGGGACTGAAGACGATGATGAGGAGCACATTCCCCACGACCTCTTCACGGAGATGGACGAGCTCTGCTACCGAGACGGGGAAGAGTACGAGTGGAAAGAGACAGCCAG
Seq C2 exon
GTGGCTGAAGTTCGAAGAGGATGTTGAGGATGGTGGTGACCGATGGAGTAAACCGTATGTGGCCACTCTGTCTTTGCACAGTCTCTTTGAGCTGAGGAGTTGTATCCTAAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTGGATGAAATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=0.404 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF075658=Band_3_cyto=PU(12.0=85.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGAGAGTCGTCGGCGTCA
R:
GTGCTTGCTCTCATATCCAGCA
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]