RnoEX0082865 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11881742-11884280:-
Coord C1 exon
chr15:11884142-11884280
Coord A exon
chr15:11883311-11883471
Coord C2 exon
chr15:11881742-11881930
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCTCTATATTATTTATTTAGGTG
3' ss Score
8.49
5' ss Seq
CAGGTTATG
5' ss Score
2.37
Exon sequences
Seq C1 exon
ACACGCCATCGCAGAGGGTGCAGTTCATCCTTGGGACTGAAGACGATGATGAGGAGCACATTCCCCACGACCTCTTCACGGAGATGGACGAGCTCTGCTACCGAGACGGGGAAGAGTACGAGTGGAAAGAGACAGCCAG
Seq A exon
GTGGCTGAAGTTCGAAGAGGATGTTGAGGATGGTGGTGACCGATGGAGTAAACCGTATGTGGCCACTCTGTCTTTGCACAGTCTCTTTGAGCTGAGGAGTTGTATCCTAAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTGGATGAAATAGCAG
Seq C2 exon
ATATGGTGTTAGACAACATGATAGCGTCTGGCCAGCTAGATGACTCCATAAGGGAGAATGTTCGAGAAGCTCTTCTGAAGAGACATCATCATCAAAATGAGAAAAGGTTTACAAGTCGGATTCCCCTCGTTCGATCCTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'7-8,'7-6,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.000 C2=0.271
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(12.0=85.5)
C2:
PF075658=Band_3_cyto=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGTTCATCCTTGGGAC
R:
GAACGAGGGGAATCCGACTTG
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]