GgaEX1053615 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38470723-38474224:-
Coord C1 exon
chr2:38474089-38474224
Coord A exon
chr2:38472949-38473109
Coord C2 exon
chr2:38470723-38470911
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGTATGTGTATTCGTTTCAGGTG
3' ss Score
9.74
5' ss Seq
CAGGTTGCA
5' ss Score
-3.12
Exon sequences
Seq C1 exon
ACACGCCATCCCAACGAGTGCAGTTTATCCTGGGTACTGAAGATGATGATGAACACATTCCTCATGATCTCTTCACTGAAATGGATGAACTTTGCTTCAGGGATGGAGAAGAGTATGAGTGGAAAGAAACTGCTAG
Seq A exon
GTGGCTAAAATTTGAAGAGGATGTTGAAGATGGTGGTGATCGTTGGAGCAAGCCTTATGTAGCAACTCTGTCTCTACACAGTCTCTTTGAATTGCGAAGCTGTATTCTTAATGGGACGGTCATGTTGGACATGAGAGCAAACACACTAGATGAGATAGCAG
Seq C2 exon
ATATGGTCTTGGACAACATGATTGCTTCTGGCCAACTGGATGAATCGATAAGGGAGAATGTGAGAGTGGCACTTCTAAAAAGGCACCATCATCAAAATGAGAAAAAATTCAGCAATCGGATTCCCTTGGTTCGGTCTTTCGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAACGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'6-11,'6-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(17.5=85.5)
C2:
PF075658=Band_3_cyto=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGCAGTTTATCCTGGGT
R:
ACCAAGGGAATCCGATTGCTG
Band lengths:
252-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]