BtaEX6093373 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11731134-11737680:+
Coord C1 exon
chr22:11731134-11731235
Coord A exon
chr22:11734312-11734445
Coord C2 exon
chr22:11737632-11737680
Length
134 bp
Sequences
Splice sites
3' ss Seq
TATGTTGAAAATTCTCACAGGTT
3' ss Score
5.81
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTCGTGGTTATGATTTTAAAGCTGACATCTGGAGTTTTGGGATCACAGCCATTGAACTGGCCACGGGGGCAGCTCCTTACCATAAGTACCCACCGATGAAG
Seq A exon
GTTTTAATGCTGACACTGCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAAGATCCAGAAAAAAG
Seq C2 exon
ACCAACAGCAGCAGAACTGCTAAGGCACAAGTTTTTCCAAAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927-'13-14,'13-12,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
PF0006920=Pkinase=FE(16.0=100)
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGTTATGATTTTAAAGCTGACA
R:
GGCTTTTTGGAAAAACTTGTGCC
Band lengths:
146-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]