MmuEX6069727 @ mm9
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119169168-119176362:-
Coord C1 exon
chr9:119176261-119176362
Coord A exon
chr9:119173868-119174001
Coord C2 exon
chr9:119169168-119169216
Length
134 bp
Sequences
Splice sites
3' ss Seq
CCAAACTTCTTACTACACAGGTT
3' ss Score
6.68
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTCGAGGTTATGATTTTAAAGCTGATATTTGGAGTTTTGGAATCACTGCGATTGAACTGGCCACAGGGGCAGCTCCTTATCATAAATATCCACCAATGAAG
Seq A exon
GTTTTAATGCTGACGCTCCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAGAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAGGATCCAGAAAAAAG
Seq C2 exon
GCCAACAGCAGCAGAACTGTTGAGGCACAAATTTTTCCAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737-'13-17,'13-13,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.161 C2=0.294
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
PF0006920=Pkinase=FE(16.0=100)
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAGGTTATGATTTTAAAGCTGA
R:
TGCTTTCTGGAAAAATTTGTGCCT
Band lengths:
148-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: