MmuEX6069727 @ mm10
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119260050-119267244:-
Coord C1 exon
chr9:119267143-119267244
Coord A exon
chr9:119264750-119264883
Coord C2 exon
chr9:119260050-119260098
Length
134 bp
Sequences
Splice sites
3' ss Seq
CCAAACTTCTTACTACACAGGTT
3' ss Score
6.68
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTCGAGGTTATGATTTTAAAGCTGATATTTGGAGTTTTGGAATCACTGCGATTGAACTGGCCACAGGGGCAGCTCCTTATCATAAATATCCACCAATGAAG
Seq A exon
GTTTTAATGCTGACGCTCCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAGAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAGGATCCAGAAAAAAG
Seq C2 exon
GCCAACAGCAGCAGAACTGTTGAGGCACAAATTTTTCCAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737-'21-27,'21-23,23-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.119 C2=0.187
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
PF0006920=Pkinase=FE(16.0=100)
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Skipping Isoform:
ENSMUST00000040853fB2861
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAGGTTATGATTTTAAAGCTGA
R:
TGCTTTCTGGAAAAATTTGTGCCT
Band lengths:
148-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types