DreEX6094687 @ danRer10
Exon Skipping
Gene
ENSDARG00000027500 | oxsr1b
Description
oxidative stress responsive 1b [Source:ZFIN;Acc:ZDB-GENE-040426-723]
Coordinates
chr24:19937630-19938754:-
Coord C1 exon
chr24:19938653-19938754
Coord A exon
chr24:19938409-19938542
Coord C2 exon
chr24:19937630-19937678
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATGTTTATGTGCGTTTGCAGGTG
3' ss Score
10.93
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
GTCAAAGGTTACGACTTCAAAGCAGACATCTGGAGTTTTGGGATCACAGCCATTGAACTGGCCACAGGCGCAGCTCCGTACCACAAATACCCTCCGATGAAG
Seq A exon
GTGTTGATGTTGACTCTCCAGAATGATCCGCCTTGCCTCGAGACTGGCATCACAGACAAAGAGATGGTGAAGAAATATGGAAAGTCTTTGAGGAAGATGATCTCGCAGTGTTTGCAGAAAGAGCCGGAGAAAAG
Seq C2 exon
GCCGACATCATCAGAGCTCTTAAAACATAAATTCTTCCAGAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027500-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.244 C2=0.500
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
PF0006920=Pkinase=FE(16.0=100)
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTACGACTTCAAAGCAGACA
R:
CTTGGCTTTCTGGAAGAATTTATGT
Band lengths:
146-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]