GgaEX1041653 @ galGal3
Exon Skipping
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4823763-4828850:+
Coord C1 exon
chr2:4823763-4823864
Coord A exon
chr2:4826761-4826894
Coord C2 exon
chr2:4828802-4828850
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATAGACATAATTCTTCCAGGTT
3' ss Score
3.99
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCAGAGGATACGATTTCAAGGCAGACATCTGGAGCTTTGGGATCACTGCTATCGAACTGGCTACAGGGGCAGCTCCTTATCATAAATACCCCCCGATGAAG
Seq A exon
GTTTTAATGCTGACACTACAAAATGATCCCCCGTCTTTGGAAACCGGTGTGCAAGATAAGGAGATGCTGAAGAAGTATGGGAAGTCTTTTAGGAAGATGATTTCATCGTGCCTACAAAAAGACCCTGAAAAAAG
Seq C2 exon
ACCTACAGCAGCAGAACTTTTAAGACACAAATTTTTCACGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.311 C2=0.176
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
PF0006920=Pkinase=FE(16.0=100)
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAGGATACGATTTCAAGGCA
R:
TGCTTTCGTGAAAAATTTGTGTCT
Band lengths:
148-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]