RnoEX0062787 @ rn6
Exon Skipping
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127949749-127956651:-
Coord C1 exon
chr8:127956550-127956651
Coord A exon
chr8:127954558-127954691
Coord C2 exon
chr8:127949749-127949797
Length
134 bp
Sequences
Splice sites
3' ss Seq
CCAAAATTCTTACTACACAGGTT
3' ss Score
5.76
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTCGAGGTTATGATTTTAAAGCTGATATCTGGAGTTTTGGAATCACAGCGATTGAACTAGCCACAGGGGCAGCTCCTTATCATAAATATCCTCCAATGAAG
Seq A exon
GTTTTAATGCTGACACTCCAGAACGATCCTCCTTCTTTGGATACTGGTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAGGATCCAGAAAAAAG
Seq C2 exon
ACCAACAGCAGCAGAACTGTTGAGGCACAAGTTTTTCCAGAAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136-'13-19,'13-17,15-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.0=100)
A:
PF0006920=Pkinase=FE(16.0=100)
C2:
PF0006920=Pkinase=PD(4.4=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAGGTTATGATTTTAAAGCTGA
R:
GCCTTCTGGAAAAACTTGTGCC
Band lengths:
147-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]