BtaEX6093952 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21772643-21779162:-
Coord C1 exon
chr22:21779097-21779162
Coord A exon
chr22:21777809-21777946
Coord C2 exon
chr22:21772643-21772768
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGACCTTTCTTCCTACCAGATT
3' ss Score
9.65
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAGGGGAATAACAAGTCACAGCAGCATGAGAGCACCAGCAGCTACAACTACAGGGTGGTCAAAGAG
Seq A exon
ATTTTGATCCGACTGAGCAAACTCTGTGTTCAAGAGAGCGCATCCGTGCGGAAGAGCAGGAAGCAGCAACAGCGCTTGCTCCGGAACATGGGCGCCCACGCCGTGGTGCTGGAGCTGCTGCAGATCCCCTACGAGAAG
Seq C2 exon
GCTGAAGACACCAAGATGCAGGAGATAATGAGGCTGGCTCATGAGTTTCTTCAGAATTTCTGCGCCGGCAACCAGCAGAATCAGGCTCTGCTCCACAAACATATAAACCTGTTTCTAAACCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'30-29,'30-28,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
A:
PF0136516=RYDR_ITPR=FE(25.0=100)
C2:
PF0136516=RYDR_ITPR=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATAACAAGTCACAGCAGC
R:
CCCTGGGTTTAGAAACAGGTT
Band lengths:
189-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]