HsaEX6054149 @ hg19
Exon Skipping
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180]
Coordinates
chr3:4725965-4730304:+
Coord C1 exon
chr3:4725965-4726030
Coord A exon
chr3:4726753-4726890
Coord C2 exon
chr3:4730179-4730304
Length
138 bp
Sequences
Splice sites
3' ss Seq
GATTTCTTTCATTCTACTAGATT
3' ss Score
7.06
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGGGAAATAACAAGCCACAAAAGCATGAAAGCACCAGCAGCTACAACTACAGAGTGGTCAAAGAG
Seq A exon
ATTTTGATTCGGCTTAGCAAACTCTGTGTTCAAGAGAGTGCCTCAGTGAGAAAGAGCAGGAAGCAGCAACAGCGTCTGCTCCGGAACATGGGCGCGCACGCCGTGGTGCTGGAGCTGCTGCAGATTCCCTATGAGAAG
Seq C2 exon
GCCGAAGATACCAAGATGCAAGAGATAATGAGGTTGGCTCATGAATTTTTGCAGAATTTCTGCGCAGGCAACCAGCAGAATCAAGCTTTGCTACATAAACACATAAACCTGTTTCTCAACCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
A:
PF0136516=RYDR_ITPR=FE(25.0=100)
C2:
PF0136516=RYDR_ITPR=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAATAACAAGCCACAAAAGCA
R:
CCCTGGGTTGAGAAACAGGTT
Band lengths:
190-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)