RnoEX6014532 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140428249-140432422:+
Coord C1 exon
chr4:140428249-140428314
Coord A exon
chr4:140428975-140429112
Coord C2 exon
chr4:140432297-140432422
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATGGTTGATTTTTCTCTCAGATT
3' ss Score
7.57
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGGGGACCAGTAAGCCACTGAAGCACGAAAGCACCAGCAGCTACAACTACCGAGTGGTGAAAGAG
Seq A exon
ATTCTGATTCGACTTAGCAAGCTCTGTGTTCAAGAGAGCGCGTCGGTGAGGAAGAGCAGGAAGCAGCAGCAGCGACTGCTGAGGAACATGGGTGCCCATGCTGTGGTGCTGGAGCTGCTGCAGATCCCCTATGAGAAG
Seq C2 exon
GCCGAAGATACCAAGATGCAGGAGATCATGAGGCTGGCTCACGAATTTCTGCAGAATTTCTGCGCAGGCAACCAGCAGAACCAAGCTTTGCTACATAAACACATAAACCTGTTTCTCAACCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'47-47,'47-46,48-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
A:
PF0136516=RYDR_ITPR=FE(25.0=100)
C2:
PF0136516=RYDR_ITPR=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCACTGAAGCACGAAAGC
R:
CCCTGGGTTGAGAAACAGGTT
Band lengths:
180-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]