DreEX6092754 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35663384-35668427:-
Coord C1 exon
chr11:35668359-35668427
Coord A exon
chr11:35666177-35666314
Coord C2 exon
chr11:35663384-35663509
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTCCTGTCTTCAGATC
3' ss Score
11.63
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
AGGGACTCTGGCTCAGACAAAAAAAAGACGGACGGAAATGGCAGTGACAATTACAGAGACGTAAAAGAG
Seq A exon
ATCCTCCTGCGTCTCAGTAAACTGTGCGTGCAGGAAGGGCCGTCGGGGAAGAAGAGTAAGAAACAGCAGCAAAGGCTCTTGAGGAACATGGGAGCTCATTCAGTGGTGCTGGAGCTTCTGCAGATCCCATATGAGAAG
Seq C2 exon
GGTGAGGACGTCCGAATGCAAGAGATCATGAAACTGGCTCATGAGTTTCTTCAGAACTTCTGCGCAGGGAACCAGCAAAACCAGGCTCTGCTCCACAAACACATCAACCTGTTTCTCAACCCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'31-30,'31-29,32-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=0.239 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(1.7=13.0)
A:
PF0136516=RYDR_ITPR=FE(25.0=100)
C2:
PF0136516=RYDR_ITPR=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACTCTGGCTCAGACAAA
R:
CCGGGGTTGAGAAACAGGTTG
Band lengths:
194-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]