Special

GgaEX1030869 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19094066-19096549:+
Coord C1 exon
chr12:19094066-19094131
Coord A exon
chr12:19094995-19095132
Coord C2 exon
chr12:19096424-19096549
Length
138 bp
Sequences
Splice sites
3' ss Seq
AAAGCAAATCTCTTCTCCAGATC
3' ss Score
6.21
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GAAGGTCACAGCAAGTCACAGAAGCCTGAAAGTACGAGCAGCTACAACTACCGCGTAGTGAAAGAG
Seq A exon
ATCCTGCTGCGGCTCAGCAAGCTGTGCGTCCAGGAGAGCGCCTCGGTCCGCAAGAGCCGCAAGCAGCAGCAGCGACTGCTGAGGAACATGGGAGCACATGCAGTTGTGCTTGAATTGCTGCAGATCCCCTATGAAAAG
Seq C2 exon
GCTGAAGACACGAGGATGCAGGAGATAATGAAGCTTGCACATGAGTTTTTACAGAACTTTTGTGCTGGGAACCAACAGAACCAGGCATTGCTGCACAAGCACATAAACCTGTTCCTTAACCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'30-34,'30-33,31-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.545 A=0.065 C2=0.000
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
A:
PF0136516=RYDR_ITPR=FE(25.0=100)
C2:
PF0136516=RYDR_ITPR=FE(22.8=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAAGTCACAGAAGCCT
R:
CCCTGGGTTAAGGAACAGGTT
Band lengths:
186-324
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]