Special

BtaEX6093953 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21769944-21777946:-
Coord C1 exon
chr22:21777809-21777946
Coord A exon
chr22:21772643-21772768
Coord C2 exon
chr22:21769944-21770144
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCTTCTCCCTCACAGGCT
3' ss Score
10.93
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATTTTGATCCGACTGAGCAAACTCTGTGTTCAAGAGAGCGCATCCGTGCGGAAGAGCAGGAAGCAGCAACAGCGCTTGCTCCGGAACATGGGCGCCCACGCCGTGGTGCTGGAGCTGCTGCAGATCCCCTACGAGAAG
Seq A exon
GCTGAAGACACCAAGATGCAGGAGATAATGAGGCTGGCTCATGAGTTTCTTCAGAATTTCTGCGCCGGCAACCAGCAGAATCAGGCTCTGCTCCACAAACATATAAACCTGTTTCTAAACCCAGGG
Seq C2 exon
ATCCTGGAAGCCGTCACGATGCAGCACATCTTCATGAACAACTTCCAACTGTGCAGCGAGATCAACGAGCGGGTCGTCCAGCACTTTGTTCACTGCATCGAGACTCACGGTCGAAATGTCCAGTACATCAAGTTCCTGCAGACGATTGTCAAGGCTGAAGGGAAATTCATCAAGAAGTGCCAAGACATGGTCATGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'31-30,'31-29,33-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=FE(25.0=100)
A:
PF0136516=RYDR_ITPR=FE(22.8=100)
C2:
PF0136516=RYDR_ITPR=FE(36.7=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGTTCAAGAGAGCGCA
R:
TGTACTGGACATTTCGACCGTG
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]