Special

GgaEX1030870 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19094995-19097119:+
Coord C1 exon
chr12:19094995-19095132
Coord A exon
chr12:19096424-19096549
Coord C2 exon
chr12:19096919-19097119
Length
126 bp
Sequences
Splice sites
3' ss Seq
TATTTGTCATGCAATCACAGGCT
3' ss Score
3.29
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATCCTGCTGCGGCTCAGCAAGCTGTGCGTCCAGGAGAGCGCCTCGGTCCGCAAGAGCCGCAAGCAGCAGCAGCGACTGCTGAGGAACATGGGAGCACATGCAGTTGTGCTTGAATTGCTGCAGATCCCCTATGAAAAG
Seq A exon
GCTGAAGACACGAGGATGCAGGAGATAATGAAGCTTGCACATGAGTTTTTACAGAACTTTTGTGCTGGGAACCAACAGAACCAGGCATTGCTGCACAAGCACATAAACCTGTTCCTTAACCCAGGG
Seq C2 exon
ATTCTGGAAGCAGTAACAATGCAGCACATTTTCATGAACAACTTCCAGCTTTGCAGTGAGATTAATGAACGCGTTGTTCAACACTTTGTCCACTGTATAGAAACACATGGCAGAAATGTTCAGTACATAAAGTTCCTGCAGACAATTGTCAAGGCGGAAGGAAAATTCATTAAGAAATGCCAAGATATGGTAATGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'31-35,'31-34,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0136516=RYDR_ITPR=FE(25.0=100)
A:
PF0136516=RYDR_ITPR=FE(22.8=100)
C2:
PF0136516=RYDR_ITPR=FE(36.7=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGCAAGAGCCGCAAG
R:
TCCGCCTTGACAATTGTCTGC
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]