DreEX6092755 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35661675-35666314:-
Coord C1 exon
chr11:35666177-35666314
Coord A exon
chr11:35663384-35663509
Coord C2 exon
chr11:35661675-35661875
Length
126 bp
Sequences
Splice sites
3' ss Seq
AACGATGTACATTTTGGCAGGGT
3' ss Score
4.06
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATCCTCCTGCGTCTCAGTAAACTGTGCGTGCAGGAAGGGCCGTCGGGGAAGAAGAGTAAGAAACAGCAGCAAAGGCTCTTGAGGAACATGGGAGCTCATTCAGTGGTGCTGGAGCTTCTGCAGATCCCATATGAGAAG
Seq A exon
GGTGAGGACGTCCGAATGCAAGAGATCATGAAACTGGCTCATGAGTTTCTTCAGAACTTCTGCGCAGGGAACCAGCAAAACCAGGCTCTGCTCCACAAACACATCAACCTGTTTCTCAACCCCGGG
Seq C2 exon
ATCCTGGAGGCAATCACCATGCAGCACATATTCATGAACAACTTCCAGCTATGCAGTGAGATGAACGAACGTGTCGTGCAGCACTTTGTTCACTGCATCGAGACCCATGGCCGACACGTCCAGTACCTGAAGTTCCTGCAGACCATCGTCAAGGCAGAGAACAAATTCATCAAGAAGTGCCAGGACATTGTGATGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'32-31,'32-30,33-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.0=100)
A:
PF0136516=RYDR_ITPR=FE(22.8=100)
C2:
PF0136516=RYDR_ITPR=FE(36.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCAGTGGTGCTGGAGCTT
R:
CTCGGCCATCACAATGTCCTG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]