RnoEX6014531 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140428975-140434643:+
Coord C1 exon
chr4:140428975-140429112
Coord A exon
chr4:140432297-140432422
Coord C2 exon
chr4:140434443-140434643
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTGCTCTCACACAGGCC
3' ss Score
9.95
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATTCTGATTCGACTTAGCAAGCTCTGTGTTCAAGAGAGCGCGTCGGTGAGGAAGAGCAGGAAGCAGCAGCAGCGACTGCTGAGGAACATGGGTGCCCATGCTGTGGTGCTGGAGCTGCTGCAGATCCCCTATGAGAAG
Seq A exon
GCCGAAGATACCAAGATGCAGGAGATCATGAGGCTGGCTCACGAATTTCTGCAGAATTTCTGCGCAGGCAACCAGCAGAACCAAGCTTTGCTACATAAACACATAAACCTGTTTCTCAACCCAGGG
Seq C2 exon
ATCCTGGAAGCAGTGACCATGCAGCACATCTTCATGAACAACTTCCAGCTGTGCAGTGAGATCAACGAGAGAGTGGTCCAGCATTTCGTTCACTGCATAGAGACCCACGGTCGAAATGTCCAGTATATCAAGTTTCTCCAGACTATTGTCAAGGCCGAAGGGAAATTCATTAAAAAGTGCCAAGACATGGTCATGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'48-48,'48-47,49-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(25.0=100)
A:
PF0136516=RYDR_ITPR=FE(22.8=100)
C2:
PF0136516=RYDR_ITPR=FE(36.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTGAGGAAGAGCAGGAAG
R:
CCCTTCGGCCTTGACAATAGT
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]