BtaEX6093969 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21650123-21657855:-
Coord C1 exon
chr22:21657691-21657855
Coord A exon
chr22:21651754-21651949
Coord C2 exon
chr22:21650123-21650215
Length
196 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTTGTTTTTAAAGCTT
3' ss Score
9.01
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTCTGCAATAAAATCATTTTTCTGATGAGCTTTGTGGGCAACTGTGGGACATTCACCAGAGGCTACCGGGCCATGGTTCTGGATGTTGAGTTCCTTTATCACCTGCTATACCTGCTGATCTGCGCCATGGGGCTCTTCGTCCATGAGTTCTTCTACAGTTTGCTG
Seq A exon
CTTTTTGATTTAGTGTACAGAGAAGAGACTCTGCTCAATGTCATTAAAAGCGTCACTCGCAACGGCCGGTCCATCATCTTGACGGCGGTTCTGGCTTTGATCCTGGTTTACCTGTTCTCCATAGTGGGCTACCTTTTCTTCAAAGATGACTTCATCTTGGAAGTAGATAGGCTGCCCAATGAAACCTCTCTTCCAG
Seq C2 exon
AAGCCAGCGAGAGTTTGGCAAGTGAGTTCCTGTACTCTGACGTGTGTAGGGTGGAGACTGGGGAGAACTGCTCCTCTCCGGCACCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'67-67,'67-66,68-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.156
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(21.0=100)
A:
PF0052026=Ion_trans=FE(25.3=100)
C2:
PF0052026=Ion_trans=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCTGATGAGCTTTGTGGGC
R:
CTTCTTTGGGTGCCGGAGAG
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]