Special

GgaEX6010803 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18513544-18516625:+
Coord C1 exon
chr12:18513544-18513708
Coord A exon
chr12:18514945-18515140
Coord C2 exon
chr12:18516524-18516625
Length
196 bp
Sequences
Splice sites
3' ss Seq
GCCTTTGTTTTTTGTCCCAGCTC
3' ss Score
8.93
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTTTGTAATAAAATCATTTTTCTGATGAGTTTTGTGGGTAACTGTGGGACCTTCACTAGAGGATACAAGGCCATGATCATGGACGTAGAATTTCTGTATCATCTGCTGTACCTCCTGATCTGTGCTCTGGGGCTCTTTGTACACGAATTCTTCTATAGTTTGCTG
Seq A exon
CTCTTTGACTTGGTGTACCGAGAGGAGACCTTGCTGAACGTCATCAAGAGTGTCACCCGCAATGGGCGCTCCATCATCCTGACCGCTGTGCTCGCGCTCATCCTCGTGTACCTGTTCTCCATAGTGGGGTACCTGTTCTTCAAAGATGACTTTATCCTGGAAGTAGACAAGCTCCCCAATGAAACGTTATTGCCAG
Seq C2 exon
ATCGCACAGAACCAGGTGAAACCATGACTGGGGAGTTTCTCTATTCAGATGTGTGCAAAGCAGGCAGCAGTGAGAACTGTTCTTCAATCATTCCTTCAGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'73-80,'73-79,74-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.030 C2=0.057
Domain overlap (PFAM):

C1:
PF0052026=Ion_trans=FE(20.8=100)
A:
PF0052026=Ion_trans=FE(25.1=100)
C2:
PF0052026=Ion_trans=FE(13.1=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTTGTGGGTAACTGTGGG
R:
GATCTGAAGGAATGATTGAAGAACA
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]