DreEX0040334 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35550056-35552640:-
Coord C1 exon
chr11:35552476-35552640
Coord A exon
chr11:35551734-35551923
Coord C2 exon
chr11:35550056-35550142
Length
190 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTATGTCTAGCTC
3' ss Score
6.34
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
GTGGGCAATAAAGTGATCTTCCTAATGAGTTTTGTGGGCAATCGGGGCACGTTCACGAGAGGATACAAGGCCATGATCATGGACGTGGAGTTCCTGTATCATCTGCTGTACCTCATCATATGCAGCCTTGGGGTCTTCGTTCACGTCTTCTTCTATAGTTTACTT
Seq A exon
CTCTTCGACCTGATCTACCGGGAGGAGACGCTGTTGAACGTCATCAAAAGCGTGACCAGGAACGGGCGCTCCATCGTGCTGACCGCTGTTCTGGCTCTCATCCTGGTCTACCTCTTCTCCATCGTCGGATACATCATCTTTAAGGATGACTTTATCCTGACTGTGGACAGGATATCCAATAAGACTCTCG
Seq C2 exon
AGCAATCAGCCAGTAAGATGGGAGAGTTCCTGGCTGGAGCAGTGTGTAGAAAAGAAGAGAACTGTTCCACTGAGACCATGATGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'65-63,'65-62,66-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(21.3=100)
A:
PF0052026=Ion_trans=FE(24.9=100)
C2:
PF0052026=Ion_trans=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCAATAAAGTGATCTTCCT
R:
CGTCCATCATGGTCTCAGTGG
Band lengths:
252-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]