GgaEX6010803 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19157815-19160896:+
Coord C1 exon
chr12:19157815-19157979
Coord A exon
chr12:19159216-19159411
Coord C2 exon
chr12:19160795-19160896
Length
196 bp
Sequences
Splice sites
3' ss Seq
GCCTTTGTTTTTTGTCCCAGCTC
3' ss Score
8.93
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GTTTGTAATAAAATCATTTTTCTGATGAGTTTTGTGGGTAACTGTGGGACCTTCACTAGAGGATACAAGGCCATGATCATGGACGTAGAATTTCTGTATCATCTGCTGTACCTCCTGATCTGTGCTCTGGGGCTCTTTGTACACGAATTCTTCTATAGTTTGCTG
Seq A exon
CTCTTTGACTTGGTGTACCGAGAGGAGACCTTGCTGAACGTCATCAAGAGTGTCACCCGCAATGGGCGCTCCATCATCCTGACCGCTGTGCTCGCGCTCATCCTCGTGTACCTGTTCTCCATAGTGGGGTACCTGTTCTTCAAAGATGACTTTATCCTGGAAGTAGACAAGCTCCCCAATGAAACGTTATTGCCAG
Seq C2 exon
ATCGCACAGAACCAGGTGAAACCATGACTGGGGAGTTTCTCTATTCAGATGTGTGCAAAGCAGGCAGCAGTGAGAACTGTTCTTCAATCATTCCTTCAGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'62-65,'62-64,63-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.057
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(20.8=100)
A:
PF0052026=Ion_trans=FE(25.1=100)
C2:
PF0052026=Ion_trans=FE(13.1=100)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTTGTGGGTAACTGTGGG
R:
GATCTGAAGGAATGATTGAAGAACA
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]