RnoEX6014521 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140541691-140548244:+
Coord C1 exon
chr4:140541691-140541855
Coord A exon
chr4:140546406-140546601
Coord C2 exon
chr4:140548152-140548244
Length
196 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTCTTGAAGCTT
3' ss Score
9.38
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTCTGCAATAAAATCATCTTCCTGATGAGCTTTGTGGGCAACTGTGGGACCTTCACCAGAGGCTACCGAGCCATGGTTCTGGACGTTGAGTTCCTCTATCATTTGCTGTATCTACTGATCTGTGCCATGGGCCTCTTCGTACATGAGTTTTTCTATAGTTTGCTG
Seq A exon
CTTTTTGATTTAGTGTACAGAGAGGAGACTTTGCTTAATGTCATTAAAAGTGTCACCCGCAATGGACGGTCCATCATCTTGACAGCGGTCCTGGCTCTGATTCTGGTTTACCTGTTCTCAATTGTGGGCTACCTGTTCTTCAAGGATGACTTTATCTTGGAAGTAGACAGGTTGCCCAATGAGACAGCTGGTCCAG
Seq C2 exon
AAACTGGTGAGAGTTTGGCCAACGATTTCCTGTACTCTGATGTGTGCCGGGTAGAGACGGGGGAGAACTGCACCTCTCCGGCACCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'90-94,'90-93,91-94=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.125
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(21.0=100)
A:
PF0052026=Ion_trans=FE(25.3=100)
C2:
PF0052026=Ion_trans=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGATGAGCTTTGTGGG
R:
CTTCTTTGGGTGCCGGAGAG
Band lengths:
242-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]