BtaEX6094446 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44272252-44282702:+
Coord C1 exon
chr22:44272252-44272435
Coord A exon
chr22:44272568-44272708
Coord C2 exon
chr22:44282619-44282702
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTTTTCCTCCTCAGTGG
3' ss Score
10.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TTTTATGTTAGTAGGAGAGCCTTTTGCTGGTAAAACAAAAGTTCTGCATATGCTGGCTGATACTCTAACTCTTATGAATGAACGTGGCTGTGGAGAGGAAGAAAAAGTCATTTATAGGACTGTAAACCCCAAATCCATTACTATGGGCCAACTTTTTGGACAATTTGACCCAGTGTCCCATGAG
Seq A exon
TGGACTGATGGTATTGTAGCTAATACTTTTAGAGAATTTGCCTTATCAGAAACACCTGACCGGAAATGGGTTGTATTTGATGGTCCCATTGACACTTTGTGGATAGAGAGCATGAACACAGTACTGGACGATAATAAAAAG
Seq C2 exon
CTTTGCCTTATGAGTGGAGAAATCATTCAGATGTCCCCTCAAATGAGCCTCATCTTTGAAACAATGGACCTTTCCCAGGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'27-26,'27-25,28-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.4=98.4)
A:
PF077289=AAA_5=FE(31.9=100)
C2:
PF077289=AAA_5=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGTAAAACAAAAGTTCTGCA
R:
GGCCTGGGAAAGGTCCATTG
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]