GgaEX6010288 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8674471-8676921:-
Coord C1 exon
chr12:8676738-8676921
Coord A exon
chr12:8675411-8675551
Coord C2 exon
chr12:8674471-8674554
Length
141 bp
Sequences
Splice sites
3' ss Seq
CCTACGTTCTCCCCCTCTAGTGG
3' ss Score
8.99
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
CTTTATGCTGGTAGGGGAATCTTTTTCTGGGAAGACCAAAGTTCTACATGTGTTGGCAGATACATTGTCTCTTATGAAAGAACGTGGGTATGGTGAAGAAGAAAGAGTGGTTTTTAGAACTGTGAACCCCAAATCAATCACTATGGGTCAGCTTTTTGGGCAGTTTGATATGGTATCACATGAG
Seq A exon
TGGACAGATGGTATAATTGCTAATACTTTCAGAGAATTTGCATTATCTGAGACTCCTGAGCGCAAATGGGTTATCTTTGATGGCCCCATTGATACCCTGTGGATAGAAAGCATGAACACAGTTCTGGATGACAACAAAAAG
Seq C2 exon
CTTTGTTTGATGAGTGGGGAAATCATCCAGATGTCTCTTCAGATGAGTCTTATTTTTGAAACAATGGACCTTTCCCAGGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'38-41,'38-40,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.4=98.4)
A:
PF077289=AAA_5=FE(31.9=100)
C2:
PF077289=AAA_5=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAGGGGAATCTTTTTCTGGG
R:
AGGTCCATTGTTTCAAAAATAAGACT
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]