DreEX6079824 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19609422-19609989:-
Coord C1 exon
chr23:19609806-19609989
Coord A exon
chr23:19609588-19609728
Coord C2 exon
chr23:19609422-19609505
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCATATGTCCCTTTTATCAGTGG
3' ss Score
6.3
5' ss Seq
AAGGCAAAT
5' ss Score
1.13
Exon sequences
Seq C1 exon
GTTCATGCTTGTCGGAGAACCATTTGCTGGAAAAACCAAAGTACTTCATGTTCTTGCTGATACTTTGACCCTGATGAATGAGTCGGGCTACAACGAAGAAGAAAAAGTAATTTACCAAACTGTCAATCCTAAATCCATCACGATGGGTCAGCTTTTTGGCCAATTTGATCCTGTGTCACATGAG
Seq A exon
TGGACTGATGGGATTGTGGCAAACACCTTTCGAGAATTTGCCTCAAGCGAGACCCCAGAGAGGAAATGGGTGGTGTTTGATGGCCCCATAGACACTCTGTGGATTGAGAGTATGAACACTGTGCTGGATGACAACAAAAAG
Seq C2 exon
CTATGCCTCATGAGCGGGGAGATTATTCAGATGTCCAGTCAGATGAGTCTGATTTTTGAGGCCATGGATCTGTCACAAGCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'33-34,'33-33,34-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.4=98.4)
A:
PF077289=AAA_5=FE(31.9=100)
C2:
PF077289=AAA_5=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTCGGAGAACCATTTGC
R:
TGTGACAGATCCATGGCCTCA
Band lengths:
255-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]