HsaEX6056781 @ hg19
Exon Skipping
Gene
ENSG00000174844 | DNAH12
Description
dynein, axonemal, heavy chain 12 [Source:HGNC Symbol;Acc:2943]
Coordinates
chr3:57415418-57419555:-
Coord C1 exon
chr3:57419372-57419555
Coord A exon
chr3:57419094-57419234
Coord C2 exon
chr3:57415418-57415501
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTCCTCCTCAGTGG
3' ss Score
10.1
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTTTATGTTAGTAGGAGAGCCTTTTGCTGCTAAGACAAAAGTTCTGCATGTGCTGGCGGATACGCTAACTTTAATGAATGAACATGGCTATGGAGAGGAAGAAAAGGTCATTTATAGAACTGTAAACCCCAAATCTATTACTATGGGCCAACTTTTTGGACAGTTTGACCCAGTGTCTCATGAG
Seq A exon
TGGACTGATGGTATTGTGGCTAACACTTTTAGAGAATTTGCCTTATCAGAAACACCTGACCGGAAATGGGTTGTATTTGATGGTCCTATTGACACTTTGTGGATAGAGAGCATGAACACAGTATTGGATGATAATAAAAAG
Seq C2 exon
CTTTGCCTTATGAGTGGAGAAATCATTCAGATGTCCCCCCAAATGAGCCTCATCTTTGAAACAATGGACCTTTCCCAGGCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-'33-34,'33-33,34-34=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.4=98.4)
A:
PF077289=AAA_5=FE(31.9=100)
C2:
PF077289=AAA_5=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAGTAGGAGAGCCTTTTGC
R:
GGTCCATTGTTTCAAAGATGAGGC
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)