RnoEX6054496 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2444062-2448218:+
Coord C1 exon
chr16:2444062-2444245
Coord A exon
chr16:2444380-2444520
Coord C2 exon
chr16:2448135-2448218
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTCTGTCTCCTCAGTGG
3' ss Score
10.5
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTTCATGTTGGTAGGAGAGCCTTTTGCTGCTAAGACAGAAGTGCTGCATATTCTGGCTGACACTTTAACTCTTATGAATGAACGCAACTATGGAGACGAAGAAAAGGTCATGTATAGGACTGTAAACCCCAAATCAATTACTATGGGCCAACTTTTTGGGCAGTTTGACCCAGTGTCTCATGAG
Seq A exon
TGGACGGATGGTATCGTGGCAAACACGTTTAGAGAATTTGCCTTAGCGGAATCACCTGACCGGAAATGGGTTGTGTTCGATGGCCCCATTGATACTCTGTGGATAGAGAGCATGAATACAGTACTGGATGATAACAAAAAG
Seq C2 exon
CTTTGCCTTATGAGCGGAGAAATCATTCAAATGTCCCCTCAAATGAGCCTCATCTTTGAAACAATGGACCTTTCACAGGCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'35-41,'35-40,36-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.4=98.4)
A:
PF077289=AAA_5=FE(31.9=100)
C2:
PF077289=AAA_5=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGTAGGAGAGCCTTTTGC
R:
GGTCCATTGTTTCAAAGATGAGGC
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]