MmuEX6040107 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26781346-26785343:+
Coord C1 exon
chr14:26781346-26781529
Coord A exon
chr14:26781666-26781806
Coord C2 exon
chr14:26785260-26785343
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCTTTTTTTCCTCAGTGG
3' ss Score
10.11
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTTCATGTTGGTAGGAGAGCCTTTTGCTGCCAAGACAGAAGTGCTGCACGTGCTGGCGGACACGTTAACTCTTATGAATGAACGCAACTATGGAGACGAAGAAAAGGTCATGTATAGGACTGTAAACCCCAAATCAATTACTATGGGTCAACTTTTTGGGCAGTTTGACCCAGTGTCTCATGAG
Seq A exon
TGGACTGATGGTATTGTGGCAAACACATTTAGAGAATTTGCCTTAGCAGAATCACCTGACCGGAAGTGGGTTGTATTTGATGGTCCTATTGATACTTTGTGGATAGAGAGTATGAATACAGTATTGGATGATAATAAAAAG
Seq C2 exon
CTTTGCCTTATGAGTGGAGAAATCATTCAAATGTCCCCTCAAATGAGCCTCATCTTTGAAACAATGGACCTTTCACAGGCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(42.4=98.4)
A:
PF077289=AAA_5=FE(31.9=100)
C2:
PF077289=AAA_5=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTTGCTGCCAAGACAGA
R:
CCTGTGAAAGGTCCATTGTTTCA
Band lengths:
245-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types