BtaEX6094545 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46872582-46916757:-
Coord C1 exon
chr22:46916607-46916757
Coord A exon
chr22:46902047-46902121
Coord C2 exon
chr22:46872582-46872671
Length
75 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTCTTCCCTTCGCAGTAT
3' ss Score
10.26
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTACATCCAGGCAGCGACTTCTCCAAAAGACGTGGTCATTTTAGTGGATGTCAGTGGCAGCATGAAAGGGCTCCGCATGACGATCGCAAAGCAAACAGTCTCGTCTATTTTGGATACGCTGGGGGATGACGACTTCTTCAACATAATTGCT
Seq A exon
TATAATGAGGAGCTTCACTACGTGGAACCTTGCCTGAATGGGACATTGGTGCAAGCTGACAGGACAAACAAAGAG
Seq C2 exon
CACTTCAGGGAGCATCTGGACAAACTTTTTGCCAAAGGAATCGGAATGCTGGATATAGCTCTGAATGAAGCCTTCAACATTCTCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PU(22.2=78.4)
A:
PF135191=VWA_2=FE(13.3=100)
C2:
PF135191=VWA_2=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATCCAGGCAGCGACTTC
R:
TGTCCAGATGCTCCCTGAAGT
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]