MmuEX6040207 @ mm9
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:30113923-30160217:-
Coord C1 exon
chr14:30160067-30160217
Coord A exon
chr14:30146895-30146969
Coord C2 exon
chr14:30113923-30114012
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTCTCCCCTTTGCAGTAT
3' ss Score
9.52
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTACATCCAGGCAGCGACTTCTCCAAAGGATGTTGTCATTTTGGTGGACGTCAGTGGGAGCATGAAAGGACTCCGCTTGACCATCGCCAAGCAAACAGTGTCCTCAATACTGGATACTCTGGGTGATGATGACTTCTTCAACATCATCACG
Seq A exon
TATAACGAAGAGCTTCACTATGTGGAACCTTGTCTGAACGGAACACTGGTTCAAGCTGACAGGACCAACAAGGAG
Seq C2 exon
CACTTCAGGGAGCATTTGGACAAACTTTTTGCCAAAGGGATTGGAATGCTGGATATCGCACTGAACGAGGCCTTCAACATACTGAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PU(22.2=78.4)
A:
PF135191=VWA_2=FE(13.3=100)
C2:
PF135191=VWA_2=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGAAAGGACTCCGCTTG
R:
TGTTGAAGGCCTCGTTCAGTG
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: