GgaEX0007481 @ galGal3
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7736550-7754613:+
Coord C1 exon
chr12:7736550-7736700
Coord A exon
chr12:7744898-7744972
Coord C2 exon
chr12:7754524-7754613
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTCTTATTTCTCTGCATAGTAT
3' ss Score
7.14
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTACATCCAAGCAGCAACTTCTCCAAAAGATGTGGTAATTTTAGTAGATGTCAGTGGCAGTATGAAAGGACTTCGCTTGACTATTGCTAAGCAGACAGTTTCATCTATTTTGGATACCCTTGGAGATGATGACTTCTTCAATATAATTGCT
Seq A exon
TATAATGAAGAACTTCACTATGTAGAACCGTGTCTGAACGGAACATTGGTTCAAGCAGACAGAACCAACAAAGAG
Seq C2 exon
CATTTTAGGGAACACCTTGACAAGCTTTTTGCAAAAGGAATTGGAATGCTGGACATTGCTTTAAATGAAGCTTTCAACATGCTCAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PU(22.2=78.4)
A:
PF135191=VWA_2=FE(13.3=100)
C2:
PF135191=VWA_2=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGCAGCAACTTCTCCAA
R:
AAAGCTTGTCAAGGTGTTCCC
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event