BtaEX6094548 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46752337-46864370:-
Coord C1 exon
chr22:46864257-46864370
Coord A exon
chr22:46767087-46767165
Coord C2 exon
chr22:46752337-46752470
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGCATTCCTCTTCCTCTTAGGTT
3' ss Score
10.05
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TTCAACCACACTGGACAAGGAAGCATCTGCAGCCAGGCCATTATGCTCATCACTGACGGGGCAGTGGACACCTATGACACGATCTTTGCCAAGTACAACTGGCCAGATCGAAAG
Seq A exon
GTTCGCATCTTCACGTACCTCATTGGACGAGAGGCTGCTTTTGCAGACAATCTCAAGTGGATGGCCTGTGCCAACAAAG
Seq C2 exon
GATTTTTCACCCAGATCTCCACCTTGGCTGACGTGCAGGAAAATGTCATGGAATACCTCCATGTACTCAGCCGGCCCAAAGTCATCGACCAGGAGCACGATGTGGTGTGGACTGAAGCGTACATTGACAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117-'6-8,'6-6,7-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(20.6=100)
A:
PF135191=VWA_2=FE(14.4=100)
C2:
PF135191=VWA_2=PD(10.6=42.2),PF0274313=Cache_1=PU(8.2=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGGCCATTATGCTCAT
R:
GCTCCTGGTCGATGACTTTGG
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]