RnoEX0016120 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5236997-5355979:-
Coord C1 exon
chr16:5355866-5355979
Coord A exon
chr16:5247392-5247470
Coord C2 exon
chr16:5236997-5237130
Length
79 bp
Sequences
Splice sites
3' ss Seq
AATGTCCGTCTTCCTTTTAGGTT
3' ss Score
12.14
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTCAACCACACCGGACAAGGAAGCATTTGCAGCCAGGCCATTATGCTCATAACCGACGGGGCAGTGGACACCTACGACACCATCTTTGCAAAGTACAATTGGCCAGAGCGAAAG
Seq A exon
GTTCGAATCTTCACTTACCTCATTGGACGAGAGGCTGCTTTTGCAGACAATCTCAAGTGGATGGCTTGTGCTAACAAAG
Seq C2 exon
GATTTTTCACCCAGATCTCCACCTTGGCTGATGTGCAGGAAAATGTCATGGAATACCTCCATGTACTCAGTCGACCCAAAGTCATCGACCAGGAACATGATGTGGTGTGGACCGAAGCGTACATCGACAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287-'15-23,'15-21,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(20.6=100)
A:
PF135191=VWA_2=FE(14.4=100)
C2:
PF135191=VWA_2=PD(10.6=42.2),PF0274313=Cache_1=PU(8.7=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGGCCATTATGCTCAT
R:
TCCTGGTCGATGACTTTGGGT
Band lengths:
179-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]