MmuEX6040209 @ mm10
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29170504-29293178:-
Coord C1 exon
chr14:29293065-29293178
Coord A exon
chr14:29183563-29183641
Coord C2 exon
chr14:29170504-29170637
Length
79 bp
Sequences
Splice sites
3' ss Seq
GGTGTCCATCTTCCTTTTAGGTT
3' ss Score
10.53
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTCAACCACACTGGACAAGGAAGCATTTGCAGCCAGGCCATCATGCTCATAACTGATGGGGCAGTGGACACCTATGATACCATCTTTGCAAAATATAATTGGCCAGACCGAAAG
Seq A exon
GTTCGAATCTTTACTTACCTCATTGGACGGGAGGCTGCTTTTGCCGACAATCTCAAGTGGATGGCTTGTGCTAACAAAG
Seq C2 exon
GATTTTTCACCCAGATCTCCACCTTGGCTGATGTGCAGGAAAATGTCATGGAATACCTCCATGTGCTTAGCCGACCTAAAGTCATTGACCAGGAGCATGATGTGGTGTGGACCGAAGCGTACATTGACAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-'25-39,'25-38,33-39
Average complexity
S
Mappability confidence:
93%=91=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(20.6=100)
A:
PF135191=VWA_2=FE(14.4=100)
C2:
PF135191=VWA_2=PD(10.6=42.2),PF0274313=Cache_1=PU(8.2=17.8)
Main Skipping Isoform:
ENSMUST00000022567fB6900
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAAGCATTTGCAGCCAG
R:
TCGGCTAAGCACATGGAGGTA
Band lengths:
173-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types