GgaEX6010235 @ galGal4
Exon Skipping
Gene
ENSGALG00000005400 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr12:7519848-7579155:+
Coord C1 exon
chr12:7519848-7519961
Coord A exon
chr12:7571862-7571940
Coord C2 exon
chr12:7579022-7579155
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCATTGTACTTTCAGGTT
3' ss Score
10.61
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
TTCAATCACACAGGACAAGGAAGTATTTGCAGCCAAGCCATAATGTTGATTACTGATGGAGCTGTGGACACATATGACACAATATTTGCAAAATATAATTGGCCAGACAGAAAA
Seq A exon
GTTCGTATTTTCACCTATCTGATTGGAAGAGAAGCTGCTTTTGCTGACAACTTGAAATGGATGGCCTGTGCTAACAAAG
Seq C2 exon
GGTTTTTTACTCAGATCTCTACCTTAGCTGATGTTCAAGAGAATGTCATGGAATATCTCCATGTTCTTAGCCGACCAAAAGTTATTGACCAAGAGCATGACGTGGTATGGACTGAAGCATATATTGACAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(20.6=100)
A:
PF135191=VWA_2=FE(14.4=100)
C2:
PF135191=VWA_2=PD(10.6=42.2),PF0274313=Cache_1=PU(8.2=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGGAGCTGTGGACACA
R:
CCACGTCATGCTCTTGGTCAA
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]