BtaEX6094808 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014782 | STAB1
Description
Bos taurus stabilin 1 (STAB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205570]
Coordinates
chr22:48895175-48896074:-
Coord C1 exon
chr22:48895979-48896074
Coord A exon
chr22:48895360-48895455
Coord C2 exon
chr22:48895175-48895222
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCCCTTCCACCCCAGGCC
3' ss Score
10.24
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGCCGGTGCACGTGCAAGCTGGGCTTCGCGGGAGATGGCTACGTGTGCAGCCCCATTGACCCCTGCCGGGCGGGCAACGGGGGGTGCCATGATCTG
Seq A exon
GCCACCTGCCGGGCAGTGGGGGGAGGCCAGCGGGTCTGCACATGTCCTCCTGACTATGGGGGTGATGGCTTCAGCTGCTACGGAGACATCCTCAAG
Seq C2 exon
GAGCTGGAGGCAAATGCCCACTTCTCCGTCTTCTACCAGTGGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014782-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(41.7=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.2=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGCAAGCTGGGCTTC
R:
CTTAATCCACTGGTAGAAGACGGA
Band lengths:
135-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]