HsaEX0062112 @ hg19
Exon Skipping
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:18628]
Coordinates
chr3:52545666-52546659:+
Coord C1 exon
chr3:52545666-52545761
Coord A exon
chr3:52546357-52546452
Coord C2 exon
chr3:52546612-52546659
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCACTCCCACCCCAGGCC
3' ss Score
9.72
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
AGCCGATGCACCTGCAAGCTGGGCTTTGCCGGGGATGGCTACCAGTGCAGCCCCATCGACCCCTGCCGGGCAGGCAATGGCGGCTGCCACGGCCTG
Seq A exon
GCCACCTGCCGGGCAGTGGGGGGAGGTCAGCGGGTCTGCACGTGCCCCCCTGGCTTTGGGGGTGATGGCTTCAGCTGTTATGGAGACATCTTCCGG
Seq C2 exon
GAGCTGGAGGCAAATGCCCACTTCTCCATCTTCTACCAATGGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(41.7=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.2=62.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATGGCTACCAGTGCAG
R:
AAGCCATTGGTAGAAGATGGAGA
Band lengths:
111-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)