MmuEX6040438 @ mm10
Exon Skipping
Gene
ENSMUSG00000042286 | Stab1
Description
stabilin 1 [Source:MGI Symbol;Acc:MGI:2178742]
Coordinates
chr14:31151684-31152659:-
Coord C1 exon
chr14:31152564-31152659
Coord A exon
chr14:31151858-31151953
Coord C2 exon
chr14:31151684-31151731
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTTACCCCTACCAGGCT
3' ss Score
7.11
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGCCGATGCACGTGTAAGCTGGGCTTCGCTGGAAATGGCTACGAGTGCAGCCCCATTGACCCCTGTCGGGTGGGCAATGGCGGCTGCCACGGCCTG
Seq A exon
GCTACCTGCAAAGCAGTGGGGGGAGGCCAGCGGGTTTGCACATGCCCTCCTCATTTTGGTGGTGATGGCTTCAGTTGCTATGGAGATATTATCCAG
Seq C2 exon
GAACTGGAGGCAAATGCCCATTTCTCTGCCTTCTCCCAGTGGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042286-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(41.7=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.2=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGATGCACGTGTAAGCT
R:
CTTGAACCACTGGGAGAAGGC
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types