DreEX6097694 @ danRer10
Exon Skipping
Gene
ENSDARG00000076484 | stab1
Description
stabilin 1 [Source:ZFIN;Acc:ZDB-GENE-050208-554]
Coordinates
chr22:10293867-10294533:-
Coord C1 exon
chr22:10294438-10294533
Coord A exon
chr22:10294248-10294343
Coord C2 exon
chr22:10293867-10293914
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTAAATGATAATGCTTCCAGGCC
3' ss Score
2.21
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AATGAATGTAGCTGCAAGAAAGGCTACATGGGAGATGGTATCATCTGTAAAATCGTCAACCCCTGTTTGTCAGATAATGGAGGCTGCCATTCTTTG
Seq A exon
GCCAAGTGTAAATTGACAAGCCCGGGAACACGTGAATGCACATGCCCAAGCGAATTTGAAGGCGATGGACTCTCGTGTTATGGAAATATGCTTGTG
Seq C2 exon
GAGCTCGATGGAAACTCTGAATTCTATTATTTTAATCGCTTCCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076484-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(39.5=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.3=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTAGCTGCAAGAAAGGCT
R:
AGAATTCAGAGTTTCCATCGAGCT
Band lengths:
119-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]