GgaEX6009616 @ galGal3
Exon Skipping
Gene
ENSGALG00000001535 | STAB1
Description
NA
Coordinates
chr12:616443-617670:+
Coord C1 exon
chr12:616443-616538
Coord A exon
chr12:616919-617014
Coord C2 exon
chr12:617623-617670
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGTTGTGTTTTCAGGCC
3' ss Score
11.18
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AGTAAGTGTGTCTGTAAGAGAGGTTATGCTGGCGATGGCCACAACTGCGATGCAATCAACCCATGCCTCATGGACAACGGTGGCTGCCATGACCTG
Seq A exon
GCCATTTGTGTACCCCTTGGAGGAGGGGAGAGGTCTTGTGCCTGCCCTGAAGGCTATGTTGGAGATGGCATGACATGCTATGGGGATGTTCTGAAA
Seq C2 exon
GAGCTGGCCGGGAGTTCCCACTTTGCAGGCTTCTATGGTTGGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(39.5=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.1=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAGTGTGTCTGTAAGAGAGGT
R:
TTAACCCAACCATAGAAGCCTGC
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]