RnoEX6054709 @ rn6
Exon Skipping
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7234056-7235014:-
Coord C1 exon
chr16:7234919-7235014
Coord A exon
chr16:7234222-7234317
Coord C2 exon
chr16:7234056-7234103
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTATTCCTTACCTCTACCAGGCT
3' ss Score
6.36
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGCCGATGCACATGTAAGCTGGGCTTCGCTGGAGACGGTTACGAGTGCAGCCCCATCGACCCCTGTCGCGTAGGCAATGGGGGCTGCCATGGCCTG
Seq A exon
GCTACCTGCAAGGCAGTGGGAGGAGGCCAGCGGGTTTGCACGTGCCCCCCTCATTTTGGTGGTGATGGCTTCAGTTGCTATGGAGACATCATCCAG
Seq C2 exon
GAACTGGAGGCAAATGCCCACTTCTCTGCCTTCTCCCAGTGGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434-'27-31,'27-30,28-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(41.7=46.9),PF129472=EGF_3=PU(27.0=31.2)
A:
PF129472=EGF_3=PD(67.6=78.1)
C2:
PF0246917=Fasciclin=PU(8.2=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGATGCACATGTAAGCTG
R:
TTAAACCACTGGGAGAAGGCAG
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]