BtaEX6094869 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046924 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr22:49002030-49002744:+
Coord C1 exon
chr22:49002030-49002149
Coord A exon
chr22:49002412-49002502
Coord C2 exon
chr22:49002628-49002744
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTCTCCCTCCCTCTCCCCAGCAT
3' ss Score
9.56
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTGGAGTGCGCCAACTTTGTGCGGGTGCTGCACCCCCACAACCGGACCCACCTGCTGGCGTGTGGCACTGGCGCCTTCCAGCCCACCTGTGCCCTCCTTGCTGTTGGGCATCGTGGAGAG
Seq A exon
CATGTGCTCCATCTGGAGCCCCGAAGCATGGAAAGTGGGAGGGGGAGATGCCCACACGAGCCCAGTCGTCCCTTCGCCAGCACCTTTGTAG
Seq C2 exon
GAGGGGAGCTGTACACAGGCCTCAATGCCGACTTCCTGGGGCATGAGGCCATGATCTTCCGGTCTGGGGGTCCCCGACCAGCCTTGCGTTCTGACTCTGACCAGAACCTCCTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046924-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.645 C2=0.200
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.7=100)
A:
PF0140314=Sema=FE(6.7=100)
C2:
PF0140314=Sema=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGCGCCAACTTTGTG
R:
ACCGGAAGATCATGGCCTCAT
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]