RnoEX0079300 @ rn6
Exon Skipping
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7306783-7307495:+
Coord C1 exon
chr16:7306783-7306902
Coord A exon
chr16:7307175-7307265
Coord C2 exon
chr16:7307379-7307495
Length
91 bp
Sequences
Splice sites
3' ss Seq
ACCCTCTCCCCTCTATCTAGCAT
3' ss Score
8.65
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
ACCGAGTGTGCCAACTTCGTGCGGGTCTTACAACCCCACAACCGGACCCATCTGCTGGCCTGCGGCACTGGCGCCTTCCAGCCCATCTGCACCTTCATCACAGTGGGGCATCGGGGGGAG
Seq A exon
CATGTGCTCCACTTGGATCCTAGCAGCATCGAAAATGGAAGGGGGCGTTGCCCACACGAGCCCAGCCGTCCCTTCGCCAGTACCTTTGTAG
Seq C2 exon
GTGGGGAGCTGTACACGGGCCTCACTGCTGATTTCCTCGGACGTGAGGCCATGATTTTCCGGAGTGGGGGTCCCCGACCAGCCCTGCGTTCTGACTCTGACCAGAGCCTCCTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952-'6-4,'6-3,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.516 C2=0.175
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.7=100)
A:
PF0140314=Sema=FE(6.7=100)
C2:
PF0140314=Sema=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCGTGCGGGTCTTACAAC
R:
CCCCACTCCGGAAAATCATGG
Band lengths:
176-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]