HsaEX0057082 @ hg38
Exon Skipping
Gene
ENSG00000010319 | SEMA3G
Description
semaphorin 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr3:52441574-52442304:-
Coord C1 exon
chr3:52442185-52442304
Coord A exon
chr3:52441819-52441909
Coord C2 exon
chr3:52441574-52441690
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTCCCTCCCACTAGCAT
3' ss Score
10.19
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
ACAGAGTGCGCCAACTTCGTGCGGGTGCTACAGCCTCACAACCGGACCCACCTGCTAGCCTGTGGCACTGGGGCCTTCCAGCCCACCTGTGCCCTCATCACAGTTGGCCACCGTGGGGAG
Seq A exon
CATGTGCTCCACCTGGAGCCTGGCAGTGTGGAAAGTGGCCGGGGGCGGTGCCCTCACGAGCCCAGCCGTCCCTTTGCCAGCACCTTCATAG
Seq C2 exon
ACGGGGAGCTGTACACGGGTCTCACTGCTGACTTCCTGGGGCGAGAGGCCATGATCTTCCGAAGTGGAGGTCCTCGGCCAGCTCTGCGTTCCGACTCTGACCAGAGTCTCTTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010319_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.423 C2=0.140
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(35.1=100)
A:
PF0140314=Sema=FE(6.7=100)
C2:
PF0140314=Sema=FE(8.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTACAGCCTCACAACC
R:
GAGGACCTCCACTTCGGAAGA
Band lengths:
172-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development