MmuEX6040488 @ mm9
Exon Skipping
Gene
ENSMUSG00000021904 | Sema3g
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:MGI Symbol;Acc:MGI:3041242]
Coordinates
chr14:32034307-32035017:+
Coord C1 exon
chr14:32034307-32034426
Coord A exon
chr14:32034707-32034797
Coord C2 exon
chr14:32034901-32035017
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCTCTCTCTAACTAGCAT
3' ss Score
9.72
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
ACGGAGTGTGCCAACTTCGTGCGGGTCTTACAACCCCATAACCGGACCCATCTGCTGGCCTGTGGCACAGGAGCCTTCCAACCCATCTGCACCTTCATCACAGTGGGGCATCGAGGGGAG
Seq A exon
CATGTGCTCCGCTTGGATGCTAGCAGCGTCGAGAATGGAAGGGGGCGTTGCCCACATGAGCCCAGCCGACCCTTCGCCAGCACCTTTGTAG
Seq C2 exon
GTGGGGAGCTATACACAGGTCTCACTGCCGATTTCCTGGGACGTGAGGCCATGATTTTCCGGAGTGGGGGTCCCCGACCAGCCCTGCGTTCTGACTCTGACCAGAGCCTCCTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021904-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.355 C2=0.175
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.7=100)
A:
PF0140314=Sema=FE(6.7=100)
C2:
PF0140314=Sema=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCGTGCGGGTCTTACAAC
R:
CCCCACTCCGGAAAATCATGG
Band lengths:
176-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: