GgaEX6009974 @ galGal3
Exon Skipping
Gene
ENSGALG00000004476 | SEMA3G
Description
NA
Coordinates
chr12:2949304-2950010:-
Coord C1 exon
chr12:2949885-2950010
Coord A exon
chr12:2949522-2949618
Coord C2 exon
chr12:2949304-2949420
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATGGTCCCACCTTCCCTCAGACC
3' ss Score
9.38
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CCCCAGACCGACTGTGCCAACTACGTCCGCCTGCTGCAGCCCTACAACAGAACACACCTGCTGGCCTGCGGGACGGGTGCCTGCCACCCCGTCTGCACCTTCATCTACGTGGGGCACCGCGGTGAG
Seq A exon
ACCCAGCATGCCTTCAGCTTGGACCCTGGTAGCACGGAGAGTGGTCGTGGCAGGTGCCCACATGAGCCTGACCGTGCATTTGCCAGCACCATCATCG
Seq C2 exon
GTGGGGAGCTCTATGCTGGCCTCACTGCGGACTTCCTCGGCCGTGATCCCGGCATCTTCCGCAGCACCGGGACCCGCGCCGCGCTGCGCACTGAGGTGGACCAGCGCCTGCTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.545 C2=0.025
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(10.4=97.6)
A:
PF0140314=Sema=FE(8.1=100)
C2:
PF0140314=Sema=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCGACTGTGCCAACTAC
R:
GGAAGATGCCGGGATCACG
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]